Homology Search for Genes Using Biased HMMs

نویسندگان

  • Xuefeng Cui
  • Tomáš Vinař
  • Broňa Brejová
  • Dennis Shasha
  • Ming Li
چکیده

Motivation: Life science researchers often require an exhaustive list of protein coding genes similar to a given query gene. To find such genes, homology search tools, such as BLAST or PatternHunter, return a set of high-scoring pairs (HSPs). These HSPs then need to be correlated with existing sequence annotations, or assembled manually into putative gene structures. This process is error-prone and labor-intensive, especially in genomes without reliable gene

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تاریخ انتشار 2007